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Fig. 2 | Genome Biology

Fig. 2

From: Chromatin spatial organization of wild type and mutant peanuts reveals high-resolution genomic architecture and interaction alterations

Fig. 2

Genomic features of A/B compartments in peanut. A Illustration of gene density, GC content, and gene expression (FPKM value) of A compartments, A to B switching compartments, different compartments, B to A switching compartments, and B compartments, in the wild type H2014 and the mutant type H1314, respectively. B Distribution of A and B compartments represented by chr04, chr07, and chr08 of H2014, with the upper line showing the partition of A (blue histogram) and B (red histogram) compartments. The lower track indicates the first principal component values showing A/B compartment status at 500-kb resolution. C The representative genomic region 18.6–24.9Mb on chr08 of H2014 displayed A/B compartments. The top two lanes indicated the first principal component values corresponding to A compartments (blue histogram) and B compartments (red histogram) in H2014 and H1314, respectively. The third lane indicated the DEGs between H2014 and H1314. Blue bars represented the upregulation, and the red bars represented the downregulation. The fourth and fifth lanes indicated the FPKM values of genes in H2014 and H1314, respectively. The remaining two lanes indicated the compartment switching between H2014 and H1314. The yellow shaded region showed uneven distribution of A and B compartments

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