From: Promotech: a general tool for bacterial promoter recognition
Bacterium | Genome accession | PubMed ID | NGS technology | #TSS | Genome length | T or V |
---|---|---|---|---|---|---|
Escherichia coli str. K-12 substr. MG1655 | NC_000913.3 | 27748404 [43] | dRNA-seq | 278 | 4,641,652 | T |
Escherichia coli str. K-12 substr. MG1655 | NC_000913.2 | 25266388 [44] | dRNA-seq | 2672 | 4,639,675 | T |
Helicobacter pylori 26695 | NC_000915.1 | 20164839 [45] | dRNA-seq | 1907 | 1,667,867 | T |
Helicobacter pylori 26695 | NC_000915.1 | 30169674 [46] | dRNA-seq | 449 | 1,667,867 | T |
Campylobacter jejuni subsp. jejuni 81116 | NC_009839.1 | 30169674 [46] | dRNA-seq | 269 | 1,628,115 | T |
Campylobacter jejuni subsp. jejuni NCTC 11168 | NC_002163.1 | 23696746 [47] | dRNA-seq | 1905 | 1,641,481 | T |
Campylobacter jejuni RM1221 | NC_003912.7 | 23696746 [47] | dRNA-seq | 2167 | 1,777,831 | T |
Campylobacter jejuni subsp. jejuni 81116 | NC_009839.1 | 23696746 [47] | dRNA-seq | 1944 | 1,628,115 | T |
Campylobacter jejuni subsp. jejuni 81-176 | NC_008787.1 | 23696746 [47] | dRNA-seq | 2003 | 1,616,554 | T |
Streptococcus pyogenes strain S119 | LR031521.1 | 30902048 [48] | dRNA-seq | 892 | 1,877,450 | T |
Salmonella enterica subsp. enterica serovar | NC_016810.1 | 22538806 [49] | dRNA-seq | 1873 | 4,878,012 | T |
Typhimurium SL1344 | ||||||
Chlamydia pneumoniae CWL029 | NC_000922.1 | 21989159 [50] | dRNA-seq | 530 | 1,230,230 | T |
Shewanella oneidensis MR-1 | NC_004347.2 | 24987095 [51] | dRNA-seq | 4729 | 4,969,811 | T |
Leptospira interrogans serovar Manilae isolate L495 | NZ_LT962963.1 | 28154810 [52] | dRNA-seq | 2865 | 4,614,703 | T |
Streptomyces coelicolor A3(2) | NC_003888.3 | 27251447 [53] | dRNA-seq | 3570 | 8,667,507 | T |
Mycolicibacterium smegmatis str. MC2 155 | NC_008596.1 | 30984135 [54] | dRNA-seq | 4054 | 6,988,209 | V |
Lachnoclostridium phytofermentans ISDg | NC_010001.1 | 27982035 [55] | Cappable-seq | 1187 | 4,847,594 | V |
Rhodobacter capsulatus SB 1003 | NC_014034.1 | – [56] | dRNA-seq | 5374 | 3,738,958 | V |
Bacillus amyloliquefaciens XH7 | CP002927.1 | 26133043 [57] | dRNA-seq | 1064 | 3,939,203 | V |