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Fig. 6 | Genome Biology

Fig. 6

From: The Pseudomonas aeruginosa accessory genome elements influence virulence towards Caenorhabditis elegans

Fig. 6

Features of the LVA-associated teg block. a Dot plot comparison between the teg block repeat from strain PA7790 (y axis) and homologous genomic regions in 3 strains with complete genomes (PA7790, SCV20265, and atcc27853). Solid blue boxes indicate the tandem repeat sequence observed. b Sequence conservation (PhastCons score) for the alignment of the teg block genomic regions displayed on a. The presence of two tandem repeated regions is indicated between the vertical blue lines. c Phylogenetic distribution of the teg block in the 52-strains isolate set. Presence (blue color) or absence (gray color) of the teg block is indicated. The block is found in 10 strains in different clades. d Gene neighborhood around the teg block insertions sites (blue triangles) in strains atcc27853, SCV20265, and PA7790. Predicted protein-coding genes are indicated by black boxes. Genes with homologs in the PAO1 strain are named. e Gene presence in the teg block repeat of strains PA7790 and z8. Predicted protein-coding genes are indicated by black and red boxes. Red boxes indicate genes with links to viral-related function. Eight genes in teg block of strain z8 are named (tegG to tegN)

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