From: Evaluating nanopore sequencing data processing pipelines for structural variation identification
Aligner | Dataset | Bases mapped (Gb) | Mismatch rate | Coverage |
---|---|---|---|---|
minimap2 | NA12878 | 77.5 | 1.97E−01 | 24.4 |
NGMLR | NA12878 | 73.6 | 1.92E−01 | 23.4 |
GraphMap | NA12878 | 80.2 | 2.17E−01 | 25.1 |
minimap2 | CHM13 | 144.7 | 1.12E−01 | 43.7 |
NGMLR | CHM13 | 137.3 | 1.05E−01 | 42.0 |
GraphMap | CHM13 | 139.6 | 1.24E−01 | 42.7 |
minimap2 | CHM1 | 128.6 | 1.35E−01 | 39.6 |
NGMLR | CHM1 | 127.6 | 1.35E−01 | 39.5 |
GraphMap | CHM1 | 130.4 | 1.52E−01 | 39.7 |
minimap2 | Chr20 | 3.3 | 1.35E−01 | 48.5 |
NGMLR | Chr20 | 3.2 | 1.34E−01 | 47.4 |
GraphMap | Chr20 | 3.3 | 1.54E−01 | 49.1 |