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Table 3 Alignment statistics

From: Evaluating nanopore sequencing data processing pipelines for structural variation identification

Aligner

Dataset

Bases mapped (Gb)

Mismatch rate

Coverage

minimap2

NA12878

77.5

1.97E−01

24.4

NGMLR

NA12878

73.6

1.92E−01

23.4

GraphMap

NA12878

80.2

2.17E−01

25.1

minimap2

CHM13

144.7

1.12E−01

43.7

NGMLR

CHM13

137.3

1.05E−01

42.0

GraphMap

CHM13

139.6

1.24E−01

42.7

minimap2

CHM1

128.6

1.35E−01

39.6

NGMLR

CHM1

127.6

1.35E−01

39.5

GraphMap

CHM1

130.4

1.52E−01

39.7

minimap2

Chr20

3.3

1.35E−01

48.5

NGMLR

Chr20

3.2

1.34E−01

47.4

GraphMap

Chr20

3.3

1.54E−01

49.1