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Table 3 Baseline methods in term-centric evaluation of protein function prediction

From: The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens

 

Model number

Training data

Score assignment

Expression

1

Gene expression compendium for P. aeruginosa PAO1

Highest correlation score out of all pairwise correlations

 

2

 

Top 10 average correlation score

BLAST

1

All experimental annotation in UniProt-GOA. Sequences from Swiss-Prot

Highest sequence identity out of all pairwise BLASTp hits

 

2

All experimental annotation in UniProt-GOA. Sequences from Swiss-Prot and TrEMBL

 

blastcomp

1

All experimental and computational annotations in UniProt-GOA. Sequences from Swiss-Prot

 
 

2

All experimental and computational annotations in UniProt-GOA. Sequences from Swiss-Prot and TrEMBL

 
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Genome Biology

ISSN: 1474-760X

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