Fig. 3
From: OrthoFinder: phylogenetic orthology inference for comparative genomics
Summary of OrthoFinder analysis of a set of Chordata species: Ciona intestinalis, Danio rerio, Oryzias latipes, Xenopus tropicalis, Gallus gallus, Monodelphis domestica, Mus musculus, Rattus norvegicus, Pan troglodytes, and Homo sapiens. Bar charts and heat map contain data for each species, aligned to the corresponding species in the tree in a. a The species tree inferred by STAG and rooted by STRIDE. b Percentage of genes from each species assigned to orthogroups. c The number of species-specific orthogroups. d The number of genes with orthologs in any/all species. e Heat map of the number of orthogroups containing each species pair (top right) and orthologs between each species (bottom left). f Ortholog multiplicities for two species, C. intestinalis and H. sapiens, with respect to all other species. g The number of gene duplication events on each terminal branch of the species tree. h The number of duplications on each branch of the species tree and retained in all descendant species. OG, orthogroup; sp., species; spp., species (plural); dups., gene duplication events