Fig. 1
From: RaGOO: fast and accurate reference-guided scaffolding of draft genomes
The RaGOO pipeline. a Contigs are aligned to the reference genome with Minimap2 and are ordered and oriented according to those alignments. b Normal alignments between a contig and a reference chromosome (top) and example alignments between a reference chromosome and an intrachromosomal chimera (bottom left) and an interchromosomal chimera (bottom right). Red arrows represent potential contig breakpoints