Program | Random | V4 | V1Â V3 | V3Â V5 |
---|---|---|---|---|
 | Alignment accuracy (%) | |||
hmmufotu | 96.57 | 100.00 | 98.11 | 100.00 |
hmmalign | 73.45 | 99.66 | 100.00 | 100.00 |
nhmmer | 91.50 | 100.00 | 98.12 | 100.00 |
blastn | 100.00 | 100.00 | 100.00 | 100.00 |
 | Speed (reads ∙ s− 1 ∙ cpu−1) | |||
hmmufotu | 77.1 | 155.1 | 86.8 | 56.2 |
hmmalign | 24.2 | 38.2 | 26.8 | 21.0 |
nhmmer | 44.6 | 77.5 | 47.6 | 41.4 |
blastn | 0.228 | 0.228 | 0.222 | 0.220 |