From: UMI-count modeling and differential expression analysis for single-cell RNA sequencing
NB vs ZINB | Poisson vs NB | |||||||
---|---|---|---|---|---|---|---|---|
Protocol | Cells used (n) | Genes detected (n) | Genes tested (n) | Genes converged (n) | ZINB | NB | Poisson | Poisson (%) |
UMI count | ||||||||
CEL-Seq2/C1(A) | 34 | 16,690 | 11,345 | 11,345 | 0 | 2968 | 8377 | 73.84 |
CEL-Seq2/C1(B) | 37 | 17,229 | 12,190 | 12,189 | 0 | 3794 | 8395 | 68.87 |
Drop-Seq(A) | 42 | 16,579 | 10,702 | 10,702 | 0 | 4277 | 6425 | 60.04 |
Drop-Seq(B) | 34 | 15,469 | 9288 | 9288 | 0 | 3659 | 5629 | 60.61 |
MARS-Seq(A) | 29 | 14,551 | 8266 | 8266 | 0 | 4592 | 3674 | 44.45 |
MARS-Seq(B) | 36 | 15,406 | 9644 | 9644 | 0 | 5848 | 3796 | 39.36 |
SCRB-Seq(A) | 39 | 16,411 | 12,955 | 12,955 | 0 | 1214 | 11,741 | 90.63 |
SCRB-Seq(B) | 45 | 16,944 | 13,212 | 13,212 | 0 | 2115 | 11,097 | 83.99 |
CEL-Seq2/C1(A) | 34 | 16,690 | 11,345 | 10,679 | 3679 | 6385 | 615 | 5.76 |
CEL-Seq2/C1(B) | 37 | 17,229 | 12,190 | 12,155 | 1174 | 10,443 | 538 | 4.43 |
Drop-Seq(A) | 42 | 16,579 | 10,702 | 10,690 | 121 | 9601 | 968 | 9.06 |
Drop-Seq(B) | 34 | 15,469 | 9288 | 9278 | 91 | 8329 | 858 | 9.25 |
MARS-Seq(A) | 29 | 14,551 | 8266 | 8132 | 761 | 7161 | 210 | 2.58 |
MARS-Seq(B) | 36 | 15,406 | 9644 | 9531 | 1333 | 7974 | 224 | 2.35 |
SCRB-Seq(A) | 39 | 16,411 | 12,955 | 12,954 | 0 | 11,814 | 1140 | 8.80 |
SCRB-Seq(B) | 45 | 16,944 | 13,212 | 13,212 | 0 | 11,964 | 1248 | 9.45 |
Read count | ||||||||
Smart-Seq2(A) | 80 | 21,076 | 15,294 | 15,098 | 7905 | 5795 | 1398 | 9.26 |
Smart-Seq2(B) | 77 | 20,861 | 15,224 | 15,152 | 6456 | 7244 | 1452 | 9.58 |
Smart-Seq/C1(A) | 69 | 19,699 | 13,518 | 13,513 | 16 | 12,761 | 736 | 5.45 |
Smart-Seq/C1(B) | 61 | 19,100 | 12,949 | 12,947 | 0 | 11,888 | 1059 | 8.18 |