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Table 1 Comparison of results obtained with MICRA, MIRA and IonGAP

From: MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing data

  MICRA with DH10B MICRA without DH10B MIRA IonGAP
Time 9 minutes 11 minutes 3 h >3 h
Number of contigs > 500 bp 1 41 267 197
N50 4686138 2836109 88618 121061
Genome fraction (%) 100 97.195 96.314 96.752
Number of Ns 2 91 89 4
Number of mismatches 1 73 147 116
Number of short indels 1 17 63 64
Number of long indels 0 5 5 0
Number of genes 4127 + 0 part 4019 + 7 part 3919 + 106 part 3927 + 95 part
Number of misassemblies 0 19 5 9