Fig. 3From: MICRA: an automatic pipeline for fast characterization of microbial genomes from high-throughput sequencing dataExamples of MICRA results highlighting the biological features. a Extracted lines of the CSV annotation file from mapping. The yellow highlighted lines show the shiga toxin 2 genes and several tellurite resistance genes characteristic of the strain. b The comparative genome picture produced with CGView against the E. coli 55989 strain. The additional ROD elements correspond to the deleted regions identified in Rhode et al. [32] c Extracted results of MICRA de novo contig annotation showing components of the microcin gene cluster, the tellurite resistance gene cluster, and the mercury resistance gene cluster. d Venn diagram showing the comparison of CDSs obtained with MICRA between the strains EL2009-2050, EL2009-2071, and TY2482Back to article page