From: Editing inducer elements increases A-to-I editing efficiency in the mammalian transcriptome
Substrate | Edit sitea | Percentage editing | Reference to editing level | Conserved adjacent stemb | Stable adjacent stemc | Length of EIE (nt) | Number of base pairs in EIE | Distance edit site–EIE (nt) | 5′ EIE | 3′ EIE |
---|---|---|---|---|---|---|---|---|---|---|
GluA2 | Q/R | 100 | [31] | Yes | Yes | 102 | 43 | 45 | Â | X |
Gabra3 | I/M | 92 | [31] | Yes | Yes | 149 | 54 | 143 | Â | X |
GluA3 | R/G | 91 | [31] | Yes | Yes | 81 | 32 | 220 | Â | X |
FLNB | Q/R | 90 | [52] | No | ND | ND | ND | ND | Â | Â |
Htrc2 | I/V | 85 | [31] | Yes | Yes | 64 | 27 | 159 | Â | X |
GluK2 | Q/R | 83 | [31] | Yes | Yes | 129, 60 | 42, 25 | 48, 32 | X | X |
ADAR2 | +24 | 82 | [31] | Yes | Yes | 86 | 37 | 60 | X | Â |
Cyfip2 | K/E | 75 | [31] | Yes | Yes | 116 | 47 | 138 | Â | X |
GluA2 | R/G | 72 | [31] | Yes | Yes | 79 | 30 | 230 | Â | X |
GluK1 | Q/R | 62 | [31] | Yes | Yes | 73 | 27 | 70 | Â | X |
BLCAP | Y/C | 50 | [53] | Yes | Yes | 71, 59, 64 | 33, 26, 28 | 37, 90, 123 | X | Â |
IGFBP7 | K/E | 45 | [54] | No | ND | ND | ND | ND | Â | Â |
FLNA | Q/R | 43 | [31] | Yes | Yes | 105 | 36 | 38 | Â | X |
Nova1 | S/G | 30 | [47] | No | ND | Â | ND | ND | Â | Â |
KCNA1 | I/V | 25 | [31] | No | ND | Â | ND | ND | Â | Â |
PLCH2 | R/G | 20 | [47] | No | ND | Â | ND | ND | Â | Â |
TMEM63B | Q/R | 20 | [47] | No | ND | Â | ND | ND | Â | Â |
CCNI | R/G | 15 | [47] | No | ND | Â | ND | ND | Â | Â |
Azin1 | S/G | 10 | [52] | No | ND | Â | ND | ND | Â | Â |
Copa | I/V | 10 | [52] | No | ND | Â | ND | ND | Â | Â |
GPATCH8 | K/R | 10 | [47] | No | ND | Â | ND | ND | Â | Â |
NCSTN | S/G | 7 | [47] | No | ND | Â | ND | ND | Â | Â |
OSGEP | I/M | 7 | [47] | No | ND | Â | ND | ND | Â | Â |