From: Massive A-to-I RNA editing is common across the Metazoa and correlates with dsRNA abundance
Organisma | Tissue/Source | Source readsb [% aligned] | Hyper-editing reads | Editing events | Unique editing sites [% A-to-G of all types] | Unique sites overlapping with coding regionsc [% of total] | Unique sites overlapping with repeatsc [% of total] |
---|---|---|---|---|---|---|---|
Human | Brain | 64,313,204 [92] | 22,117 | 117,383 | 75,984 [99] | 31 [0] | 70,160 [92] |
Chimpanzee | Brain | 20,083,064 [66] | 2327 | 10,866 | 9916 [95] | 76 [1] | 9089 [92] |
Rhesus | Brain | 215,339,102 [87] | 169,735 | 921,561 | 525,245 [91] | 1796 [0] | 499,388 [95] |
Mouse | Brain | 114,374,684 [90] | 5784 | 28,910 | 13,748 [94] | 99 [1] | 9497 [69] |
Rat | Brain | 238,077,800 [84] | 23,724 | 119,260 | 31,788 [87] | 1096 [3] | 23,562 [74] |
Minke whale | Brain | 51,470,260 [94] | 20,301 | 180,079 | 121,897 [100] | 701 [1] | 106,429 [87] |
Cow | Brain | 208,706,410 [87] | 70,520 | 389,830 | 200,770 [99] | 1161 [1] | 188,187 [94] |
Sheep | Brain | 31,846,364 [91] | 15,792 | 83,756 | 17,316 [93] | 84 [0] | 15,198 [88] |
Opossum | Brain | 69,848,223 [65] | 613 | 2926 | 2168 [90] | 132 [6] | 1786 [82] |
Chicken | Brain | 269,226,888 [88] | 24,690 | 169,793 | 79,728 [98] | 2991 [4] | 42,718 [54] |
Lizard | Brain | 183,282,934 [60] | 98,483 | 700,905 | 122,793 [98] | 284 [0] | 52,343 [43] |
Frog | Brain | 51,896,478 [75] | 54,519 | 388,744 | 147,172 [97] | 180 [0] | 69,943 [48] |
Elephant shark | Brain | 139,569,606 [75] | 67,704 | 449,965 | 200,171 [89]d | 428 [0] | 162,066 [81] |
Purple sea urchin | Young juvenile | 76,613,634 [71] | 36,570 | 216,215 | 83,594 [80]d | 239 [0] | 25,661 [31] |
Octopus | CNS | 344,308,354 [86] | 1,135,890 | 7,851,521 | 1,053,826 [99] | - | - |
Sea hare (Aplysia) | CNS | 63,075,904 [77] | 2952 | 23,757 | 12,546 [95] | 2 [0] | 936 [7] |
Fly (Drosophila) | Head | 257,255,489 [97] | 6124 | 57,065 | 39,472 [100] | 1124 [3] | 14,471 [37] |
Nematode (C. elegans) | Larvae | 133,158,570 [97] | 8691 | 65,543 | 21,713 [100] | 244 [1] | 11,782 [54] |
Coral | WT | 65,782,768 [61] | 47,546 | 314,345 | 127,069 [88] | - | - |
Yeast (S. cerevisiae) | WT | 23,339,332 [99] | 7 | 42 | 12 [63] | - | - |
Thale cress (Arabidopsis) | WT | 49,166,984 [96] | 5 | 26 | 11 [13] | - | - |