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Fig. 1 | Genome Biology

Fig. 1

From: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers

Fig. 1

The F1 score, precision, recall, and AUPR (where tools are sorted by decreasing mean F1 score) across datasets with available truth sets for taxonomic classifications at the (a) genus (35 datasets), (b) species (35 datasets), and (c) subspecies (12 datasets) levels. d The F1 score changes depending on relative abundance thresholding, as shown for two datasets. The upper bound in red marks the optimal abundance threshold to maximize F1 score, adjusted for each dataset and tool. The lower bound in black indicates the F1 score for the output without any threshold. Results are sorted by the difference between upper and lower bounds

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