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Fig. 4 | Genome Biology

Fig. 4

From: stageR: a general stage-wise method for controlling the gene-level false discovery rate in differential expression and differential transcript usage

Fig. 4

Expression pattern of the PDLIM5 gene in the case study. The used fraction for every transcript is relative to the total expression of the genomic locus for a respective sample. Black points represent normal tissue, and red points represent tumoural tissue. The left panel (original scale) shows the dominant transcript that is additionally upregulated in tumoural tissue. The right panel shows the usage pattern on the log scale for all transcripts and shows that the upregulation of the dominant transcript is compensated for by a downregulation of multiple other transcripts. Significantly differentially used transcripts according to the stage-wise analysis are indicated with an S at the top of the plot

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