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Table 1 Summary of CENH3 ChIP samples

From: Stable centromere positioning in diverse sequence contexts of complex and satellite centromeres of maize and wild relatives

Species/subspecies

Cultivar

Place of origin

Lineage

Plant ID

ChIP reads (in millions)

Input reads (in millions)

CentC in ChIP reads (%)

CentC in input reads (%)

Zea mays mays

B73

USA

Delta1(11.12)

Delta1-1

1.29

40.75

3.98

0.15

Zea mays mays

B73

USA

Delta1(11.12)

Delta1-2

11.55

 

2.15

 

Zea mays mays

B73

USA

Delta1(11.12)

Delta1-3

6.19

 

5.05

 

Zea mays mays

B73

USA

Delta5(11.12)

Delta5-3

1.62

31.45

2.82

0.12

Zea mays mays

B73

USA

Delta5(11.12)

Delta5-6

6.98

 

3.28

 

Zea mays mays

B73

USA

Delta5(11.12)

Delta5-6

4.97

 

2.22

 

Zea mays mays

B73

USA

Delta5(11.12)

Delta5-7

11.65

 

2.16

 

Zea mays mays

B73

USA

Delta5(11.12)

Delta5-7

10.13

 

1.77

 

Zea mays mays

B73

USA

Delta10(11.12)

Delta10-A

13.90

 

3.78

 

Zea mays mays

B73

USA

Delta10(11.12)

Delta10-B

3.40

86.77

3.14

0.14

Zea mays mays

B73

USA

Delta10(11.12)

Delta10-8

5.59

 

3.99

 

Zea mays mays

B73

USA

Delta10(11.12)

Delta10-D

4.35

 

1.93

 

Zea mays mays

B73

USA

Delta10(11.12)

Delta10-D

5.70

 

2.97

 

Zea mays mays

PI 628470

Oaxaca, Mexico

 

Oax-2

8.94

90.96

2.50

0.10

Zea mays mays

LH74

USA

 

LH74-1

10.67

 

3.74

 

Zea mays mays

LH74 x B73

USA

 

LH74B73-3

8.95

 

3.03

 

Zea mays mays

B73 x LH74

USA

 

B73LH74-1

7.13

 

3.62

 

Zea mays mays

NS701

USA

 

J201-1

2.81

 

2.65

 

Zea mays mays

B73 x NS701

USA

 

J202-4

2.93

 

2.78

 

Zea mays mays

NS701 x B73

USA

 

J203-5

2.46

 

2.60

 

Zea mays mays x Zea luxurians

B73 x PI 422162

USA

 

B73Lux

1.86

24.94

5.27

0.24

Zea mays parviglumis

Ames 21826

Guerrero, Mexico

 

26-1

5.25

43.65

7.54

0.28

Zea mays parviglumis

Ames 21889

Jalisco, Mexico

 

J205-3

2.90

36.91

5.52

0.30

Zea mays mexicana

Ames 8083

Federal District, Mexico

 

Mex-2

9.50

80.47

7.73

0.26

Zea mays mexicana

PI 566674

Durango, Mexico

 

74-1

5.44

49.19

5.08

0.30

Zea mays mexicana

PI 566677

Michoacan, Mexico

 

77-1

6.13

74.00

9.39

0.33

Zea mays huehuetenangensis

PI 441934

Heuhuetenango, Guatemala

 

Hue-2

9.07

87.92

0.83

0.05

Zea mays huehuetenangensis

PI 441934

Heuhuetenango, Guatemala

 

Hue-4

8.43

123.77

2.08

0.08

Zea diploperennis

PI 462368

Jalisco, Mexico

 

J179-1

1.82

33.57

13.53

0.33

Zea luxurians

PI 422162

Guatemala, via Florida

 

J178-3

1.92

56.45

11.05

0.37

Tripsacum dactyloides

PI 421612

USA

 

J180-3

2.18

81.02

14.61

0.48