Table 1 Genes with significant Xi expression in hF clone 12 or 34

From: Allele-specific analysis of cell fusion-mediated pluripotent reprograming reveals distinct and predictive susceptibilities of human X-linked genes to reactivation

Gene	Clone 12					Clone 34
Gene	Xa reads	Xi reads	Total reads	% Xi	τi0	Xa reads	Xi reads	Total reads	% Xi	τi0
ARSD	238	236	474	49.8	0	284	14	298	4.7	1.52E-06
CA5B	298	133	431	30.9	0	255	42	297	14.1	0
CDK16	4232	525	4757	11.0	0	3647	428	4075	10.5	0
CENPI ^a	167	6	173	3.5	0.0113	114	8	122	6.6	1.11E-05
CXorf40A	1341	3	1344	0.2	0.9975	726	191	917	20.8	0
GEMIN8	61	46	107	43.0	0	83	25	108	23.1	0
GYG2	73	31	104	29.8	0	27	0	27	0.0	0.9834
HCCS ^a	23	71	94	75.5	0	221	0	221	0.0	0.9951
MED14	441	34	475	7.2	0	268	15	283	5.3	1.73E-07
MXRA5	9706	97	9803	1.0	0.0194	6020	827	6847	12.1	0
PLCXD1	34	22	56	39.3	0	16	35	51	68.6	0
PNPLA4	106	19	125	15.2	0	108	2	110	1.8	0.6737
PRKX	298	2	300	0.7	0.9898	62	6	68	8.8	2.04E-05
RIBC1	18	6	24	25.0	1.73E-08	22	0	22	0.0	0.9812
RP11-1148 L6.5	835	0	835	0.0	0.9998	137	5	142	3.5	0.0153
RP11-706O15.1	564	24	588	4.1	2.18E-08	392	5	397	1.3	0.5506
SYAP1	45	16	61	26.2	0	44	6	50	12.0	6.16E-06
TMSB4X	31,358	660	32,018	2.1	4.15E-06	32,145	9	32,154	0.0	0.9873
UXT	48	26	74	35.1	0	30	33	63	52.4	0
WASH6P	13	11	24	45.8	0	12	10	22	45.5	0
XG	4868	4337	9205	47.1	0	3878	561	4439	12.6	0

^aGenes with discordant XCI status in previous studies

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ISSN: 1474-760X

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