Table 1 Genome statistics

Assembly version

nGp.v1.0

nGr.v1.0

Assembly size (Mb)

124.6

95.9

Scaffolds (n)

6873

4377

Scaffold N50 (bp)

121,687

88,495

Longest scaffold (bp)

600,076

688,384

Contig N50 (bp)

11,611

11,371

Longest contig (bp)

93,564

111,501

Span of N’s in assembly (bp)

21,024,229

4,445,051

GC (%)

36.7

38.1

CEGMA (Complete/Partial %)

74.19/80.65

93.55/95.56

Average CEG gene number (Complete/Partial)

1.23/1.29

1.15/1.24

Gene density (per Mb)

132.2

149.9

Genes (n)

16,466

14,378

Proteins (n)

16,417

14,309

Proteins w/Start and Stop codon (n)

14,580 (88.81 %)

13,083 (91.43 %)

Non-canonical splice sites (%)

3.56 % (n = 4059)

3.46 % (n = 3835)

PfamA domains (cutoff 1e-5) (n)

8853

8397

Best BLAST hit to nematode proteins (1e-10) (n)

8886

8603