Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants

Morandin, Claire; Tin, Mandy M. Y.; Abril, Sílvia; Gómez, Crisanto; Pontieri, Luigi; Schiøtt, Morten; Sundström, Liselotte; Tsuji, Kazuki; Pedersen, Jes Søe; Helanterä, Heikki; Mikheyev, Alexander S.

doi:10.1186/s13059-016-0902-7

Table 1 GO terms found enriched in each module

From: Comparative transcriptomics reveals the conserved building blocks involved in parallel evolution of diverse phenotypic traits in ants

Module	Caste	Worker sterility	Queen number	Invasiveness	GO Term
1	Queen	NTA	NTA	NTA	cellular protein modification process
1	Queen	NTA	NTA	NTA	protein modification process
1	Queen	NTA	NTA	NTA	macromolecule modification
1	Queen	NTA	NTA	NTA	cellular protein metabolic process
1	Queen	NTA	NTA	NTA	cytoplasm organization
2	Queen	Sterile	Single	Not invasive	positive regulation of actin nucleation
2	Queen	Sterile	Single	Not invasive	positive regulation of Arp2/3 complex-mediated actin nucleation
2	Queen	Sterile	Single	Not invasive	regulation of Arp2/3 complex-mediated actin nucleation
2	Queen	Sterile	Single	Not invasive	phosphorylation
2	Queen	Sterile	Single	Not invasive	protein metabolic process
4	Queen	NTA	NTA	NTA	negative regulation of Ras protein signal transduction
4	Queen	NTA	NTA	NTA	negative regulation of small GTPase mediated signal transduction
4	Queen	NTA	NTA	NTA	negative regulation of signal transduction
4	Queen	NTA	NTA	NTA	Ras protein signal transduction
4	Queen	NTA	NTA	NTA	negative regulation of response to stimulus
5	Queen	NTA	NTA	NTA	cellular response to alcohol
5	Queen	NTA	NTA	NTA	adenine salvage
5	Queen	NTA	NTA	NTA	cellular response to ecdysone
5	Queen	NTA	NTA	NTA	regulation of protein secretion
5	Queen	NTA	NTA	NTA	negative regulation of protein secretion
6	Queen	Sterile	NTA	NTA	mitotic DNA damage checkpoint
6	Queen	Sterile	NTA	NTA	mitotic DNA integrity checkpoint
6	Queen	Sterile	NTA	NTA	regulation of protein ubiquitination
6	Queen	Sterile	NTA	NTA	negative regulation of protein ubiquitination
6	Queen	Sterile	NTA	NTA	positive regulation of protein ubiquitination
7	Worker	Sterile	NTA	Not invasive	autophagy
7	Worker	Sterile	NTA	Not invasive	G-protein coupled receptor signaling pathway
7	Worker	Sterile	NTA	Not invasive	regulation of synaptic transmission, cholinergic
7	Worker	Sterile	NTA	Not invasive	selenocysteinyl-tRNA(Sec) biosynthetic process
7	Worker	Sterile	NTA	Not invasive	intraspecies interaction between organisms
8	Worker	NTA	NTA	NTA	protein import into mitochondrial matrix
8	Worker	NTA	NTA	NTA	negative regulation of TOR signaling
8	Worker	NTA	NTA	NTA	water-soluble vitamin metabolic process
8	Worker	NTA	NTA	NTA	cellular aldehyde metabolic process
8	Worker	NTA	NTA	NTA	vitamin metabolic process
9	Worker	NTA	NTA	NTA	double-strand break repair
9	Worker	NTA	NTA	NTA	sphingolipid metabolic process
9	Worker	NTA	NTA	NTA	double-strand break repair via homologous recombination
9	Worker	NTA	NTA	NTA	recombinational repair
9	Worker	NTA	NTA	NTA	sodium ion transport
10	Worker	NTA	NTA	Not invasive	system process
10	Worker	NTA	NTA	Not invasive	neurological system process
10	Worker	NTA	NTA	Not invasive	sensory perception of chemical stimulus
10	Worker	NTA	NTA	Not invasive	sensory perception
10	Worker	NTA	NTA	Not invasive	locomotory behavior
11	NTA	NTA	NTA	NTA	cell division
11	NTA	NTA	NTA	NTA	macromolecule metabolic process
11	NTA	NTA	NTA	NTA	negative regulation of developmental process
11	NTA	NTA	NTA	NTA	DNA conformation change
11	NTA	NTA	NTA	NTA	cellular component biogenesis
12	Worker	NTA	NTA	NTA	myofibril assembly
12	Worker	NTA	NTA	NTA	dicarboxylic acid metabolic process
12	Worker	NTA	NTA	NTA	carbohydrate metabolic process
12	Worker	NTA	NTA	NTA	actomyosin structure organization
12	Worker	NTA	NTA	NTA	striated muscle cell development
13	Queen	NTA	NTA	NTA	RNA 3'-end processing
13	Queen	NTA	NTA	NTA	melanin biosynthetic process
13	Queen	NTA	NTA	NTA	snRNA 3'-end processing
13	Queen	NTA	NTA	NTA	U6 snRNA 3'-end processing
13	Queen	NTA	NTA	NTA	mRNA polyadenylation
14	NTA	NTA	NTA	NTA	receptor clustering
14	NTA	NTA	NTA	NTA	spinal cord development
14	NTA	NTA	NTA	NTA	peptide metabolic process
14	NTA	NTA	NTA	NTA	cellular amide metabolic process
14	NTA	NTA	NTA	NTA	neuromuscular synaptic transmission
15	Queen	Sterile	NTA	Not invasive	proteolysis
15	Queen	Sterile	NTA	Not invasive	Notch signaling pathway
15	Queen	Sterile	NTA	Not invasive	ephrin receptor signaling pathway
15	Queen	Sterile	NTA	Not invasive	establishment of body hair or bristle planar orientation
15	Queen	Sterile	NTA	Not invasive	lipid transport
16	Queen	NTA	NTA	NTA	leukocyte differentiation
16	Queen	NTA	NTA	NTA	in utero embryonic development
16	Queen	NTA	NTA	NTA	neural precursor cell proliferation
16	Queen	NTA	NTA	NTA	stem cell proliferation
16	Queen	NTA	NTA	NTA	chordate embryonic development
17	Worker	NTA	NTA	NTA	chitin metabolic process
17	Worker	NTA	NTA	NTA	amino sugar metabolic process
17	Worker	NTA	NTA	NTA	glucosamine-containing compound metabolic process
17	Worker	NTA	NTA	NTA	aminoglycan metabolic process
17	Worker	NTA	NTA	NTA	carbohydrate derivative metabolic process
18	Queen	NTA	Single	NTA	cellular transition metal ion homeostasis
18	Queen	NTA	Single	NTA	transition metal ion homeostasis
18	Queen	NTA	Single	NTA	DNA topological change
18	Queen	NTA	Single	NTA	transition metal ion transport
18	Queen	NTA	Single	NTA	snRNA metabolic process
19	NTA	NTA	NTA	NTA	one-carbon compound transport
19	NTA	NTA	NTA	NTA	urea transport
19	NTA	NTA	NTA	NTA	tRNA 5'-leader removal
19	NTA	NTA	NTA	NTA	urea transmembrane transport
19	NTA	NTA	NTA	NTA	cellular macromolecule localization
20	Queen	NTA	Single	NTA	nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
20	Queen	NTA	Single	NTA	cellular macromolecule catabolic process
20	Queen	NTA	Single	NTA	cellular localization
20	Queen	NTA	Single	NTA	tissue regeneration
20	Queen	NTA	Single	NTA	nuclear export
21	Queen	NTA	NTA	NTA	Rho protein signal transduction
21	Queen	NTA	NTA	NTA	Ras protein signal transduction
21	Queen	NTA	NTA	NTA	cell adhesion
21	Queen	NTA	NTA	NTA	biological adhesion
21	Queen	NTA	NTA	NTA	regulation of Ras protein signal transduction
22	Queen	NTA	NTA	NTA	cellular protein metabolic process
22	Queen	NTA	NTA	NTA	single-organism intracellular transport
22	Queen	NTA	NTA	NTA	protein metabolic process
22	Queen	NTA	NTA	NTA	autophagic cell death
22	Queen	NTA	NTA	NTA	salivary gland cell autophagic cell death
23	Queen	NTA	NTA	NTA	purine ribonucleoside catabolic process
23	Queen	NTA	NTA	NTA	ribonucleoside catabolic process
23	Queen	NTA	NTA	NTA	purine nucleotide catabolic process
23	Queen	NTA	NTA	NTA	purine nucleoside catabolic process
23	Queen	NTA	NTA	NTA	nucleoside catabolic process
24	Worker	NTA	NTA	NTA	cellular amino acid metabolic process
24	Worker	NTA	NTA	NTA	positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
24	Worker	NTA	NTA	NTA	alcohol catabolic process
24	Worker	NTA	NTA	NTA	positive regulation of cysteine-type endopeptidase activity
24	Worker	NTA	NTA	NTA	positive regulation of endopeptidase activity
25	Worker	NTA	NTA	NTA	cofactor metabolic process
25	Worker	NTA	NTA	NTA	cofactor biosynthetic process
25	Worker	NTA	NTA	NTA	single-organism biosynthetic process
25	Worker	NTA	NTA	NTA	coenzyme metabolic process
25	Worker	NTA	NTA	NTA	coenzyme biosynthetic process
26	Worker	NTA	NTA	NTA	ribosome assembly
26	Worker	NTA	NTA	NTA	organophosphate catabolic process
26	Worker	NTA	NTA	NTA	carbohydrate derivative catabolic process
26	Worker	NTA	NTA	NTA	extracellular polysaccharide metabolic process
26	Worker	NTA	NTA	NTA	extracellular polysaccharide biosynthetic process
27	Worker	NTA	NTA	NTA	cellular metabolic process
27	Queen	NTA	NTA	NTA	DNA metabolic process
27	Queen	NTA	NTA	NTA	cellular process
27	Queen	NTA	NTA	NTA	cellular macromolecule metabolic process
27	Queen	NTA	NTA	NTA	nucleobase-containing compound metabolic process
28	Queen	NTA	NTA	NTA	primary metabolic process
28	Queen	NTA	NTA	NTA	organic substance metabolic process
28	Queen	NTA	NTA	NTA	protein folding
28	Queen	NTA	NTA	NTA	cellular macromolecule metabolic process
28	Queen	NTA	NTA	NTA	cellular protein metabolic process
29	Queen	NTA	NTA	NTA	amino acid transmembrane transport
29	Queen	NTA	NTA	NTA	amino acid transport
29	Queen	NTA	NTA	NTA	mitotic chromosome condensation
29	Queen	NTA	NTA	NTA	chromosome condensation
29	Queen	NTA	NTA	NTA	anion transmembrane transport
30	Queen	NTA	NTA	NTA	mitotic DNA damage checkpoint
30	Queen	NTA	NTA	NTA	mitotic DNA integrity checkpoint
30	Queen	NTA	NTA	NTA	regulation of protein ubiquitination
30	Queen	NTA	NTA	NTA	negative regulation of protein ubiquitination
30	Queen	NTA	NTA	NTA	positive regulation of protein ubiquitination
31	Queen	NTA	NTA	NTA	RNA processing
31	Queen	NTA	NTA	NTA	RNA methylation
31	Queen	NTA	NTA	NTA	RNA modification
31	Queen	NTA	NTA	NTA	cellular component organization or biogenesis
31	Queen	NTA	NTA	NTA	cellular component biogenesis
32	Worker	NTA	NTA	NTA	translation
32	Worker	NTA	NTA	NTA	cellular macromolecule biosynthetic process
32	Worker	NTA	NTA	NTA	gene expression
32	Worker	NTA	NTA	NTA	macromolecule biosynthetic process
32	Worker	NTA	NTA	NTA	biosynthetic process
33	Worker	NTA	NTA	NTA	hydrogen transport
33	Worker	NTA	NTA	NTA	proton transport
33	Worker	NTA	NTA	NTA	hydrogen ion transmembrane transport
33	Worker	NTA	NTA	NTA	monovalent inorganic cation transport
33	Worker	NTA	NTA	NTA	inorganic cation transmembrane transport
34	Queen	NTA	NTA	NTA	response to misfolded protein
34	Queen	NTA	NTA	NTA	proteasome localization
34	Queen	NTA	NTA	NTA	response to topologically incorrect protein
34	Queen	NTA	NTA	NTA	cellular response to topologically incorrect protein
34	Queen	NTA	NTA	NTA	mitochondrial fusion
35	NTA	NTA	NTA	NTA	phospholipid transport
35	NTA	NTA	NTA	NTA	organophosphate ester transport
35	NTA	NTA	NTA	NTA	lipid transport
35	NTA	NTA	NTA	NTA	lipid localization
35	NTA	NTA	NTA	NTA	Kupffer's vesicle development
36	Worker	NTA	Single	NTA	synapsis
36	Worker	NTA	Single	NTA	synaptonemal complex assembly
36	Worker	NTA	Single	NTA	reciprocal meiotic recombination
36	Worker	NTA	Single	NTA	reciprocal DNA recombination
36	Worker	NTA	Single	NTA	chromosome organization involved in meiosis

No enriched GO terms could be found for module 3. NTA non-trait associated

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