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Table 7 Potential functions of the 41 transcripts presenting extensively higher m6A methylation in flowers than that in leaves and roots in Arabidopsis (fold change >10 or <0.1, FDR <10−10)

From: Transcriptome-wide high-throughput deep m6A-seq reveals unique differential m6A methylation patterns between three organs in Arabidopsis thaliana

Potential functionsa

Gene ID

Referencesb

Transporter

AT1G15960, AT3G16460, AT1G80270, AT4G20860, AT3G23560, AT4G18197, AT5G44110, AT3G04620, AT4G39100

[72–75]

Defense or stress response

AT2G02100, AT1G27170, AT4G25720, AT3G16460, AT2G14080, AT4G39100, AT4G20860, AT3G23560, AT2G01830

[73, 76–78]

Redox process

AT3G50440, AT4G34900, AT2G07785, AT4G36530, AT4G20860

[18, 79]

Differentially or specifically expressed during flowering

AT3G23450, AT1G44890, AT5G44110, AT1G18370, AT1G05070, AT3G04620, AT5G62580, AT2G27380, AT2G45730, AT3G23560,

[18, 80–83]

Response to abscisic acid stimulus

AT1G76260

[84]

Cell proliferation, differentiation or circadian rhythm

AT1G78910, AT1G18370, AT1G19990, AT3G04620, AT5G62580, AT2G45730, AT5G66550, AT2G05440

[18, 80, 82]

Protein located in mitochondria or chloroplast

AT1G78910, AT4G25720, AT5G22608, AT1G80270, AT3G01200

[70, 85]

Nucleotide binding, regulation of transcription

AT1G80270, AT2G45730

 

Protein synthesis, modification, or proteolysis

AT3G28500, AT3G27110, AT2G40205, AT2G23890, AT2G45730, AT1G07070, AT4G05040, AT2G01830, AT2G27900,

[18, 86, 87]

ATP binding, ATPase or kinase activity

AT3G01200, AT2G14080

 

Signaling transduction

AT2G27900, AT2G14080, AT2G01830

[78, 88]

Carbohydrate metabolism or energy release

AT3G22210, AT1G22940, AT4G36530

[18]

sn (o) RNA or other ncRNA

AT3G57645

 
  1. aSuggests the function of RNA itself, for example, rRNA, or the functions in its expressed proteins
  2. bThe functions of many transcripts were inferred by gene ontology (GO) analysis using the online tool in TAIR (http://www.arabidopsis.org/) and some functions were inferred from the recent publications