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Table 5 KEGG pathways of the transcripts representing a higher methylation extent in one organ than the other two organs in Arabidopsis

From: Transcriptome-wide high-throughput deep m6A-seq reveals unique differential m6A methylation patterns between three organs in Arabidopsis thaliana

Organs

Pathways

Count

Hit (%)

P value

Genes

Higher in leaves

Photosynthesis

16

0.66

3.72E-11

AT3G47470, AT1G29920, AT1G29930, AT1G61520, AT3G54890, AT3G27690, AT1G15820, AT3G08940, AT5G54270, AT4G10340, AT2G05100, AT2G34430, AT2G34420, AT2G05070, AT3G61470, AT5G01530

 

Photosynthesis

28

1.15

3.01E-08

AT1G30380, AT2G20260, AT1G44575, AT5G66570, AT4G03280, AT4G05180, AT4G04640, AT1G76100, AT1G31330, AT1G03130, AT4G32260, AT1G52230, AT4G12800, AT4G02770, AT1G06680, AT1G60950, AT1G79040, AT1G55670, AT1G20340, AT4G09650, AT5G66190, AT1G15700, AT5G64040, AT3G16140, AT1G67740, AT4G28750, AT1G32550, AT3G50820

 

Carbon fixation in photosynthetic organisms

23

0.94

4.67E-05

AT1G70580, AT3G55800, AT2G21170, AT5G65690, AT3G12780, AT3G54050, AT2G01290, AT2G45290, AT2G19900, AT5G61410, AT3G60750, AT5G11520, AT5G38410, AT5G38420, AT3G26650, AT1G32060, AT1G67090, AT1G68750, AT3G47520, AT5G38430, AT4G38970, AT5G52920, AT3G04790

 

Nitrogen metabolism

11

0.45

0.03

AT3G03910, AT3G01500, AT3G23490, AT5G35630, AT2G28210, AT1G77760, AT5G14740, AT1G70410, AT1G11860, AT3G47340, AT2G41560

 

Glycosaminoglycan degradation

4

0.16

0.03

AT5G13690, AT1G05590, AT5G27730, AT1G65590

 

Glyoxylate and dicarboxylate metabolism

9

0.37

0.03

AT3G21720, AT3G47520, AT5G38430, AT5G03860, AT5G38410, AT4G17360, AT3G14415, AT5G38420

Higher in flowers

RNA degradation

7

0.60

0.03

AT5G38890, AT1G03330, AT3G07750, AT1G65700, AT1G03360, AT1G80780, AT3G03710

 

DNA replication and protein synthesis

19

1.63

0.05

AT2G34480, AT5G64650, AT1G56045, AT3G25520, AT1G80750, AT3G09500, AT3G04840, AT4G34620, AT3G28500, AT5G02610, AT4G31985, AT2G01250, AT2G19720, AT2G04390, AT1G61580, AT2G25210, AT1G07070, AT5G39850, AT1G78630

Higher in roots

Flavonoid biosynthesis

9

0.46

1.33E-05

AT5G07990, AT1G74550, AT4G34050, AT5G42800, AT2G30490, AT3G55120, AT5G08640, AT5G13930, AT4G22880

 

Carbonate metabolism

13

0.66

0.003

AT3G55800, AT3G54050, AT4G37870, AT4G26520, AT2G19900, AT4G26530, AT5G38420, AT1G42970, AT5G09660, AT5G11670, AT5G38430, AT1G12900, AT4G38970

 

Biosynthesis of phenylpropanoids

28

1.43

0.006

AT1G74550, AT1G18870, AT3G54050, AT5G28237, AT4G26530, AT1G42970, AT2G37040, AT5G50950, AT4G34230, AT1G51680, AT5G47000, AT3G17070, AT2G37130, AT4G26520, AT5G51890, AT1G15950, AT5G07990, AT5G09660, AT3G21240, AT4G34050, AT1G12900, AT4G38970, AT2G30490, AT3G53260, AT3G55120, AT5G08640, AT5G13930, AT4G22880

 

alpha-Linolenic acid metabolism

7

0.36

0.009

AT4G15440, AT3G45140, AT2G35690, AT2G06050, AT1G55020, AT1G76680, AT3G25780

 

Phenylpropanoid biosynthesis

14

0.72

0.02

AT1G74550, AT3G17070, AT2G37130, AT5G51890, AT1G15950, AT4G34050, AT3G21240, AT2G37040, AT2G30490, AT3G53260, AT4G34230, AT2G22990, AT1G51680, AT5G47000

 

Tropane, piperidine and pyridine alkaloid biosynthesis

5

0.26

0.03

AT2G29320, AT2G37040, AT2G29360, AT2G29340, AT3G53260

 

Stilbenoid, diarylheptanoid and gingerol biosynthesis

10

0.51

0.03

AT1G74550, AT4G37310, AT4G34050, AT3G26220, AT3G26200, AT2G30490, AT5G04660, AT3G53280, AT3G26280, AT3G26290