Table 4 The gene transcripts presenting differential transcript level and differential m6A methylation across three organs in Arabidopsis (fold change >2 or <0.5, FDR <0.05)
Replicates and differential transcripts | Leaves vs. Flowers | Leaves vs. Roots | Flowers vs. Roots | |||||
|---|---|---|---|---|---|---|---|---|
Hi-leaves | Hi-flowers | Hi-leaves | Hi-leaves | Hi-flowers | Hi-root | |||
Differential transcript level | Replicate 1 | Transcripts (n) | 893 | 1,826 | 1,706 | 1,869 | 2,070 | 1,148 |
Proportion (%) | 6.5 | 13.2 | 12.3 | 13.5 | 15.0 | 8.3 | ||
Total (%) | 19.7 | 25.8 | 23.3 | |||||
Replicate 2 | Transcripts (n) | 1,728 | 2,671 | 2,724 | 2,031 | 3,068 | 1,626 | |
Proportion (%) | 11.3 | 17.5 | 17.9 | 13.3 | 20.1 | 10.7 | ||
Total (%) | 28.8 | 31.2 | 30.8 | Â | ||||
Differential m6A methylation | Replicate 1 | Transcripts (n) | 2,273 | 1,601 | 2,857 | 1,537 | 2,451 | 1,649 |
Proportion (%) | 16.4 | 11.6 | 20.7 | 11.1 | 17.7 | 11.9 | ||
Total (%) | 28.1 | 31.2 | 29.6 | |||||
Replicate 2 | Transcripts (n) | 4,004 | 1,268 | 4,819 | 1,869 | 4,576 | 1,062 | |
Proportion (%) | 26.3 | 8.3 | 31.6 | 12.3 | 30.0 | 7.0 | ||
Total (%) | 34.6 | 43.8 | 37.0 | |||||