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Table 2 RPD2 partial domains corresponding to CATH structural domains

From: Most partial domains in proteins are alignment and annotation artifacts

Family

Pfam

CATH

CATH length

Accession

(Pfam)

length

class

(1st to 3rd quartile)

UniProt/PDB

PF00079

372

3.30.497.10

109 (54–172)

Q7TP87/1YXA |A

PF00118

485

3.50.7.10

177 (181–181)

F0YNJ0/1A6D |B

  

3.30.260.10

47 (38–56)

 
  

1.10.560.10

125 (115–134)

 

PF00285

356

1.10.230.10

109 (104–115)

Q98FC2/2H12 |A

PF00316

325

3.30.540.10

179 (191–192)

P00637/1BK4 |A

  

3.40.190.80

132 (132–135)

 

PF00476

383

1.20.1060.10

126 (115-182)

A2WDN6/1KFS |A

PF00710

313

3.40.50.1170

214 (214–216)

C7ZQZ8/1HFJ |A

PF01544

292

3.30.460.20

149 (147–151)

D2C657/2BBJ |A

  

1.20.58.340

76 (76–76)a

 
  

1.20.58.340

118 (118–118)

 

PF01571

211

3.30.70.1400

88 (87–88)

Q83E96/1NRK |A

PF03441

277

1.25.40.80

90 (85–88)

Q4V935/1TEZ |A

PF03598

412

3.30.1650.10

173 (155–178)

B8FZT4/3GIT |A

  

3.40.970.20

133 (129–146)

 
  

3.40.1470.10

93 (89–98)

 

PF03917

370

3.30.1490.80

28 (12–45)

Q1RL06/2HGS |A

  

3.30.470.20

166 (135–193)

 
  

1.10.1080.10

41 (33–47)

 
  1. aThe CATH:1.20.58.340 domain is annotated to two adjacent locations covered by PF01544 in [PDB:2BBJ |A].