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Table 1 Partial domains in RPD2

From: Most partial domains in proteins are alignment and annotation artifacts

 

Sequences

%

Domains

%

   

Total

270,776

100.0

290,148

100.0

   

50% partials

25,116

9.33

30,961

10.72

   

Split

13,090

4.84

18,624

6.42

   

Bounded

4,953

1.88

5,087

1.80

   

Unbounded

7,073

2.62

7,250

2.50

   

Putative partial

2,118

0.78

2,156

0.74

   
 

Minimum

1st quartile

Median

Mean

3rd quartile

Maximum

PfamA a

Sequences (number)

106.0

515.5

1,544.0

1,991.0

3,323.2

4,918.0

PF00115

50% partials (%)

0.38

2.65

4.68

9.58

11.23

77.82

PF00209

Split

0.00

0.40

1.14

4.76

4.18

72.49

PF00209

Bounded

0.00

0.76

1.31

1.97

2.53

30.51

PF00374

Unbounded

0.00

0.50

1.34

2.84

2.65

38.65

PF04734

Putative partial

0.00

0.18

0.45

0.91

0.89

21.67

PF00852

Domains (number)

113.0

570.2

1,661.5

2,132.4

3,486.2

6,557.0

PF00501

50% partials (%)

0.43

2.72

4.82

9.97

11.54

76.74

PF03069

Split

0.00

0.52

1.48

5.42

4.88

73.97

PF03069

Bounded

0.00

0.73

1.32

1.85

2.34

24.20

PF00374

Unbounded

0.00

0.49

1.30

2.70

2.44

36.40

PF04734

Putative partial

0.00

0.17

0.42

0.86

0.83

21.28

PF00852

  1. aThe Pfam27 family that produced the maximum percentage of partial domains in the corresponding partial category.