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Table 4 Most highly enriched phenotypes for GM12878

From: Spectacle: fast chromatin state annotation using spectral learning

Method

State

Number of

Number of

Number of

  

phenotypes

associated SNPs

autoimmune

    

phenotypes

Spectacle

7

16

530

0

Spectacle

8

20

732

6

Spectacle

9

12

290

0

Spectacle

17

6

276

0

Spectacle

20

29

1284

10

ChromHMM

7

5

142

0

ChromHMM

8

2

35

0

ChromHMM

9

2

28

0

ChromHMM

17

10

370

0

  1. Number of phenotypes whose SNPs were most highly enriched in a strong enhancer state, number of all non-coding SNPs associated with the phenotypes, and number of autoimmune disease-related phenotypes among the most highly enriched phenotypes in GM12878.