From: Spectacle: fast chromatin state annotation using spectral learning
Method | State | Number of | Number of | Number of |
---|---|---|---|---|
 |  | phenotypes | associated SNPs | autoimmune |
 |  |  |  | phenotypes |
Spectacle | 7 | 16 | 530 | 0 |
Spectacle | 8 | 20 | 732 | 6 |
Spectacle | 9 | 12 | 290 | 0 |
Spectacle | 17 | 6 | 276 | 0 |
Spectacle | 20 | 29 | 1284 | 10 |
ChromHMM | 7 | 5 | 142 | 0 |
ChromHMM | 8 | 2 | 35 | 0 |
ChromHMM | 9 | 2 | 28 | 0 |
ChromHMM | 17 | 10 | 370 | 0 |