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Table 1 Summary statistics for each of the four component maps (BCFemale, BCMale, JMFemale, JMMale, with equal weights) and final consensus anchoring (‘Anchored’) in the yellow catfish study

From: ALLMAPS: robust scaffold ordering based on multiple maps

 

BCFemale

BCMale

JMFemale

JMMale

Anchored

Unplaced

Linkage groups

26

27

26

27

26

n.a.

Markers (unique)

2,507

2,442

2,495

2,434

4,941

8

Markers per Mb

4.8

4.6

4.8

4.6

8.5

0.1

N50 scaffolds

158

160

158

160

161

1

Scaffolds

679

709

673

707

942

8,282

Scaffolds with 1 marker

291

302

286

303

325

0

Scaffolds with 2 markers

109

140

109

138

168

2

Scaffolds with 3 markers

63

65

63

64

92

0

Scaffolds with ≥4 markers

216

202

215

202

357

1

Total bases

524,479,992

534,215,264

523,736,261

533,964,013

580,865,792

138,224,118

(Percent of genome)

(72.9%)

(74.3%)

(72.8%)

(74.3%)

(80.8%)

(19.2%)

  1. Scaffolds with no markers, or ambiguous placements, are separately counted (‘Unplaced’). The marker density for the anchored and unplaced scaffolds represent the sum of unique markers from all input datasets.