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Table 3 rdd -downregulated stress response genes analyzed by RT-qPCR

From: DNA demethylases target promoter transposable elements to positively regulate stress responsive genes in Arabidopsis

Accessions in TAIR

Annotation

Log2 fold change inrddmicroarray

Response toFoinfection in Col-0

AT1G05700

Leucine-rich repeat kinase (LRR kinase)

-1.07

Down

AT1G58602

LRR and NB-ARC domains-containing disease resistance protein (CC-NBR-LRR)

-3.31

Slightly up

AT2G15040

Pseudogene for receptor-like protein (ATRLP18)

-2.54

Slightly up

AT3G46370

Leucine-rich repeat kinase (LRR kinase)

-3.18

Down

AT4G04570

Cysteine-rich receptor-like kinase (CRK40)

-3.28

Up

AT4G09420

Disease resistance protein (TIR-NBS class)

-1.13

No clear change

AT4G33720

Pathogenesis-related protein of CAP superfamily (CAP-PR)

-3.54

Up

AT5G38550

Jacalin lectin family protein

-4.36

Slightly up

AT5G39110

Germin-like protein

-2.44

Up

AT5G24210

Lipase class 3 family protein

-3.22

Slightly up

AT5G45890

Senescence-associated gene 12 (SAG12)

-3.77

Up

AT4G33710a

Pathogenesis-related protein of CAP superfamily (CAP-PR)

No differential expression due to background level expression

Up

  1. aThis gene is included because it is located upstream of AT4G3320 in the same orientation.