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Table 1 Cancer oncogenes with amplifications or cancer drivers with biallelic events

From: Metastatic tumor evolution and organoid modeling implicate TGFBR2as a cancer driver in diffuse gastric cancer

Origin

Known or candidate cancer driver

Biallelic event

Allelic alteration 1

Mutation or genomic aberration

Chr

Chr position or interval

Allelic alteration 2

Unique to the primary

FGFR2*

 

Amplification

6-fold amplification

10

117820033 - 119748751

 

Common to the primary tumor and metastasis

CDH1

Yes

Deletion

Partial deletion of exon 9

16

68847326 - 68847403

Germline mutation in CDH1

TP53

Yes

5’ splice site mutation

Aberrant splicing

17

7578370

Hemizygous loss of 17p arm

Unique to the metastasis

TGFBR2

Yes

Frameshift indel

Stop codon in exon 4

3

30691871

Hemizygous deletion of wild-type TGFBR2 locus

PCDH7

Yes

Missense

S87R

4

30723305

Hemizygous deletion of wild-type 4 arm

FERMT1 loci

Yes

Loss of heterozygosity

FERMT1 located in 20p12.3

20

 

FERMT1 mutation

BMP7 loci

Yes

Loss of heterozygosity

BMP7 located in 20q13.3

20

 

BMP7 mutation

  1. Chr: chromosome.