From: A comprehensive evaluation of assembly scaffolding tools
Dataset | Size (Mb) | %GC | Potential joins | Number of reads (millions) | Read length | Insert sizea | Percent reads mapped (fwd/rev) | Maximum read coverage | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  |  | Bowtie -v 0 | Bowtie -v 3 | Bowtie2 | BWA |  | ||||
S. aureus perfect | 2.8 | 32 | 27 | 0.76 | 76 | 505 | 96 | 96 | 95 | 95 | 97 | 97 | 97 | 97 | 40 |
27 | 0.76 | 76 | 2,795 | 96 | 96 | 95 | 95 | 97 | 97 | 97 | 97 | 40 | |||
940 | 0.76 | 76 | 505 | 95 | 94 | 94 | 94 | 96 | 96 | 96 | 96 | 40 | |||
940 | 0.76 | 76 | 2,995 | 95 | 94 | 94 | 94 | 97 | 96 | 96 | 96 | 40 | |||
S. aureus GAGE | 2.9 | 32 | 167 | 3.5 | 37 | 3,385 | 35 | 35 | 56 | 54 | 55 | 54 | 53 | 52 | 49 |
R. sphaeroides GAGE | 4.6 | 68 | 570 | 2.1 | 101 | 3,695 | 17 | 11 | 36 | 32 | 69 | 68 | 35 | 30 | 62 |
P. falciparum 3D7 de novo | 23.3 | 19 | 9,302 | 52.5 | 76 | 645 | 70 | 67 | 73 | 70 | 79 | 77 | 76 | 74 | 267 |
9,302 | 12.0 | 75 | 2,705 | 27 | 25 | 31 | 30 | 43 | 42 | 33 | 32 | 33 | |||
Human chromosome 14 GAGEb | 88.2 | 40 | 19,935 | 22.7 | 101 | 2,865 | 46 | 19 | 68 | 29 | 90 | 55 | 69 | 30 | 38 |
 |  |  | 19,935 | 2.4 | 57-82 | 34,500 | 47 | 6 | 73 | 48 | 93 | 85 | 79 | 56 | 3 |