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Table 1 Mammalian evolutionarily conserved sites

From: Mammalian conserved ADAR targets comprise only a small fragment of the human editosome

 

chr

Position

Strand

Gene

Region

ref_id:nucleotide cange:aa change

1

chr1

160302244

-

COPA

CDS

NM_001098398:c.A490G:p.I164V

2

chr11

105804694

+

GRIA4

CDS

NM_000829:c.A2293G:p.R765G

3

chr11

105815132

+

GRIA4

intron

 

4

chr11

105816106

+

GRIA4

intron

 

5

chr11

105816129

+

GRIA4

intron

 

6

chr11

105816145

+

GRIA4

intron

 

7

chr11

105816160

+

GRIA4

intron

 

8

chr12

5021742

+

KCNA1

CDS

NM_000217:c.A1198G:p.I400V

9

chr13

46090371

+

COG3

CDS

NM_031431:c.A1903G:p.I635V

10

chr14

26917530

-

NOVA1

CDS

NM_006489:c.A1087G:p.S363G

11

chr14

101506074

+

mir376C

microRNA

 

12

chr17

43045220

-

C1QL1

CDS

NM_006688:c.A197G:p.Q66R

13

chr19

47152854

-

DACT3

CDS

NM_145056:c.A775G:p.R259G

14

chr2

20450819

-

PUM2

3′UTR

 

15

chr2

21233202

-

APOB

CDS

NM_000384:c.C6538G:p.Q2180stop

16

chr2

210835613

+

UNC80

CDS

NM_032504:c.A7990G:p.S2664G

17

chr20

36147533

-

BLCAP

CDS

NM_001167821:c.A44G:p.K15R

18

chr20

36147563

-

BLCAP

CDS

NM_001167821:c.A14G:p.Q5R

19

chr20

36147572

-

BLCAP

CDS

NM_001167821:c.A5G:p.Y2C

20

chr20

36148080

-

BLCAP

intron

 

21

chr20

52104918

+

TSHZ2

3′UTR

 

22

chr21

30953750

-

GRIK1

CDS

NM_175611:c.A1862G:p.Q621R

23

chr21

34922801

+

SON

CDS

NM_032195:c.A1264G:p.T422A

24

chr21

34923319

+

SON

CDS

NM_032195:c.A1782G:p.L594L

25

chr21

46595620

+

ADARB1

intron

 

26

chr3

53820892

+

CACNA1D

CDS

NM_001128839:c.A4791G:p.I1597M

27

chr3

58141801

+

FLNB

CDS

NM_001164319:c.A6815G:p.Q2272R

28

chr3

62423807

-

CADPS

CDS

NM_183393:c.A3512G:p.E1171G

29

chr4

57976234

-

IGFBP7

CDS

NM_001253835:c.A284G:p.K95R

30

chr4

57976286

-

IGFBP7

CDS

NM_001253835:c.A232G:p.R78G

31

chr4

158257875

+

GRIA2

CDS

NM_000826:c.A1820G:p.Q607R

32

chr4

158257879

+

GRIA2

CDS

 

33

chr4

158258136

+

GRIA2

intron

 

34

chr4

158258137

+

GRIA2

intron

 

35

chr4

158281294

+

GRIA2

CDS

NM_000826:c.A2290G:p.R764G

36

chr5

156736808

+

CYFIP2

CDS

NM_001037332:c.A958G:p.K320E

37

chr6

34100903

-

GRM4

CDS

NM_000841:c.A371G:p.Q124R

38

chr6

44120349

+

TMEM63B

CDS

NM_018426:c.A1856G:p.Q619R

39

chr6

102337689

+

GRIK2

CDS

NM_001166247:c.A1699G:p.I567V

40

chr6

102337702

+

GRIK2

CDS

NM_001166247:c.A1712G:p.Y571C

41

chr6

102372589

+

GRIK2

CDS

NM_001166247:c.A1862G:p.Q621R

42

chr6

102372630

+

GRIK2

intron

 

43

chr6

102374616

+

GRIK2

intron

 

44

chr6

102374643

+

GRIK2

intron

 

45

chr6

150093334

+

PCMT1

intron

 

46

chr8

103841636

-

AZIN1

CDS

NM_148174:c.A1099G:p.S367G

47

chr8

103841637

-

AZIN1

CDS

NM_148174:c.A1098G:p.E366E

48

chr9

97847739

+

mir23B

microRNA

 

49

chrX

114082682

+

HTR2C

CDS

NM_000868:c.A466G:p.I156V

50

chrX

114082684

+

HTR2C

CDS

NM_000868:c.A468G:p.I156M

51

chrX

114082689

+

HTR2C

CDS

NM_000868:c.A473G:p.N158S

52

chrX

114082694

+

HTR2C

CDS

NM_000868:c.A478G:p.I160V

53

chrX

122598962

+

GRIA3

CDS

NM_000828:c.A2323G:p.R775G

54

chrX

122598998

+

GRIA3

intron

 

55

chrX

135111055

+

SLC9A6

intron

 

56

chrX

135111070

+

SLC9A6

intron

 

57

chrX

151358319

-

GABRA3

CDS

NM_000808:c.A1026G:p.I342M

58

chrX

153579737

-

FLNA

intron

 

59

chrX

153579950

-

FLNA

CDS

NM_001456:c.A6998G:p.Q2333R

  1. List of conserved editing sites. Coordinates are based on the genome version GRCh37/hg19. For each site, the table includes the following information: chromosome, genomic coordinate, strand, gene name, genomic compartment, RefSeq id (if available), editing transformation, and coordinate related to the Refseq ID, and amino acid change (for the same Refseq ID).