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Table 3 Chromosome level breakdown of haplotype statistics

From: On the design of clone-based haplotyping

Chrom

Number of clones

Number of heterozygous. variants

Fraction of heterozygous variants phased

Number of contigs

N50 Haplotype length

  

(BAC + CGI WGS)

   

1

6,892

148,691

0.973

219

2,166,488

2

7,632

156,474

0.978

195

2,905,522

3

6,677

147,498

0.985

146

3,015,997

4

6,937

159,704

0.982

106

4,113,256

5

6,101

127,746

0.983

117

2,700,783

6

5,818

142,863

0.981

119

3,005,140

7

4,781

113,746

0.974

150

2,621,008

8

4,589

98,664

0.982

114

2,413,181

9

3,485

80,480

0.966

125

2,276,528

10

4,104

99,111

0.969

109

2,264,959

11

4,233

90,557

0.979

113

3,368,062

12

4,150

93,795

0.979

116

2,641,808

13

3,395

75,463

0.984

51

2,945,506

14

2,846

62,844

0.967

69

3,059,729

15

2,520

55,794

0.967

71

2,067,670

16

2,031

59,080

0.956

123

1,252,516

17

1,965

47,238

0.96

116

1,485,600

18

2,547

56,853

0.981

43

3,345,667

19

1,155

32,849

0.956

110

660,242

20

1,649

39,551

0.958

66

1,608,505

21

1,170

34,095

0.958

36

3,226,907

22

768

19,020

0.956

65

1,057,117

Total

85,445

1,942,116

0.975

2,379

2,640,036

  1. Abbreviations: BAC, bacterial artificial chromosome; Chrom, chromosome; CGI, Complete Genomics Institute; WGS, whole genome sequencing.