Table 3 Comparison of predicted ORFs (excluding pseudogenes) with T. aestivum genomic DNA contigs
From: Separating homeologs by phasing in the tetraploid wheat transcriptome
Transcriptome | T. urartu | T. turgidum |
|---|---|---|
Putative correct homoeolog (Id ≥ 99% identity) ≥95% coverage in one CS contig | 14,678 | 32,554 |
≥95% coverage in more than one CS contig | 489 | 911 |
≥65% coverage in one or more CS contigs | 2,094 | 3,136 |
Putative homoeolog from different genome (94%≤ Id < 99%) ≥95% coverage in one CS contig | 12,239 | 17,437 |
≥95% coverage in more than one CS contig | 1,146 | 1,549 |
≥65% coverage in one or more CS contigs | 2,416 | 3,262 |
Not aligned | Â | Â |
Id <94% or coverage <65%) | 4,549 | 7,370 |
Number of query sequences with no significant BLAST hits (e-10) | 195 | 414 |
Total number of query sequences | 37,806 | 66,633 |