From: Separating homeologs by phasing in the tetraploid wheat transcriptome
 | T. turgidum | T. urartu |
---|---|---|
Contigs (n) | 140,118 | 86,247 |
Non-wheat sequencesb (eliminated) (n) | 558 | 518 |
Wheat protein coding sequences | Â | Â |
BLASTX, E-value cutoff 1e-3 | 96,244 | 59,439 |
Contigs with a Pfam domain (1e-3) | 59,917 | 39,965 |
Contig sequences without BLASTX (1e-3) or Pfam (1e-3) | 42,999 | 26,070 |
Predicted open reading frames | Â | Â |
Predicted ORFs (non-redundant, >30 amino acids) | 76,570 | 43,014 |
Fulllength | 32,548 | 22,868 |
Missing 5' end | 26,723 | 12,225 |
Missing 3' end | 12,792 | 5,376 |
Missing 5' and 3' end | 4,507 | 2,545 |
Putative pseudogenes (frameshift and/or premature stop codon) | 9,937 | 5,208 |
Putative fused transcripts | Â | Â |
Contigs with BLASTX on inconsistent strand | 4,376 | 3,628 |
Contigs with >1 predicted ORFs (>30 amino acids, no repetitive elements, not a pseudogene) | 2,164 | 1,349 |
Putative fused transcripts (excluding overlaps) (n) | 6,409 | 4,866 |