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Figure 6 | Genome Biology

Figure 6

From: SOAPfuse: an algorithm for identifying fusion transcripts from paired-end RNA-Seq data

Figure 6

Basic filtering of candidate gene pairs in SOAPfuse. (a) Duplicated span-reads and junc-reads are removed before calculating the number of supporting reads and only one duplicated read is retained. (b) Genes C and D are adjacent, and they share two exons: exon 4 and exon 5 from Gene C overlap with exon 1 and exon 2 of Gene D, respectively. Span-reads from the overlapped exons are excluded by SOAPfuse. (c) Gene pair M and N has regions with homogenous/similar sequences and reads from these regions are filtered out.

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