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Table 4 microRNA targets with PARE sequences at the expected site

From: Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

Prediction programs

Predicted targets

Targets with precise PAREa

Sitesb

Locic

Sitesb

Locic

CleaveLand

1,033

967

206

154

CleaveLandMd

794

746

170

127

psRNATarget

1,225

1,153

211

149

Totale

2,141

1,968

262

246

  1. aPARE sequences that start at the precise cleavage site predicted. bDistinct cleavage sites. cThe total number of genes the cleavage sites correspond to. dCleaveLand with the modified scoring systems described in Materials and methods. eThe number of (non-redundant) sites or loci.
  2. PARE, parallel analysis of RNA ends.