Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon

Table 1 Summary statistics of small RNA libraries

			Raw trimmed		Genome matched
Tissue or stress	Code	Abundance^a	Distinct^b	Abundance^c	Distinct^d
Root	BDI08	5,103,699	1,055,138	3,942,845	597,486
Seedling	OBD03	2,624,702	1,263,576	1,566,530	548,313
Leaf 1	BDI04	5,207,568	1,425,013	4,305,921	959,519
Leaf 2	BDI09	6,991,777	736,393	5,315,520	270,687
Stem	BDI06	3,855,537	1,926,121	3,209,322	1,435,137
Leaf and stem	OBD02	3,603,581	1,633,352	2,316,244	739,198
Panicle 1	BDI05	4,944,182	2,166,081	4,102,150	1,567,160
Panicle 2	OBD01	3,992,373	2,135,020	2,783,725	1,191,806
Shoot control for stress	BDI02	2,494,849	1,077,185	1,975,853	800,615
Drought-stressed shoot	BDI03	1,351,288	515,704	1,038,168	351,245
Salt-stressed shoot	BDI17	8,498,042	2,149,559	7,275,111	1,542,354
Cold-stressed shoot	BDI01	722,947	379,189	538,881	260,131
Heat-stressed shoot	BDI18	8,861,608	2,936,249	7,336,506	2,042,837
Submergence-stressed shoot	BDI19	9,421,125	4,336,814	7,586,861	3,037,780
Shoot control for low phosphate	BDI15	11,491,988	2,924,520	9,510,554	2,086,843
Phosphate-starved shoot	BDI16	12,405,206	2,977,218	10,490,572	2,153,426
Pooled stresses	OBD04	2,531,278	1,133,267	1,753,994	590,660
Total^e		94,101,750	21,441,607	75,048,757	12,108,240

^aRaw-trimmed abundance is the number of sequences obtained after trimming. ^bRaw-trimmed distinct is the number of different sequences. ^cGenome-matched abundance is the number of sequences that match perfectly to the genome. ^dGenome-matched distinct is the total number of different sequences that match to the genome. ^eThe totals of the abundance columns are sums and the totals of the distinct columns are unions (to give the number of non-redundant sequences).

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