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Table 5 Likelihoods of GAGE assemblies of a bumblebee, B. impatiens

From: CGAL: computing genome assembly likelihoods

Assembler

Likelihood

# reads mapped

Scaffold N50 (kb)

Contig N50 (kb)

ABySS

-30.83 × 109

72629126

-

-

CABOG

-19.99 × 109

92844610

1125

23.5

MSR-CA

-22.84 × 109

78755756

1246

32.4

SOAPdenovo

a

a

1374

57.1

  1. a Likelihood not computed as reads could not be mapped with Bowtie 2.
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Genome Biology

ISSN: 1474-760X

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