Table 3 Likelihoods of GAGE assemblies of R. sphaeroides
Assembler | Likelihood | Number of reads mapped | Coverage (%) | Scaffold N50 (kb) | Contig N50 (kb) |
|---|---|---|---|---|---|
ABySS | -27.55 × 107 | 1199197 | 99.11a | 9 | 5.9 |
ALLPATHS-LG | -26.61 × 107 | 1237938 | 99.53 | 3192 | 42.5 |
Bambus2 | -32.56 × 107 | 1111596 | 95.07 | 2439 | 93.2 |
CABOG | -39.23 × 107 | 1022732 | 92.49 | 66 | 20.2 |
MSR-CA | -31.61 × 107 | 1155078 | 96.48 | 2976 | 22.1 |
SGA | -31.58 × 107 | 1031547 | 97.69 | 51 | 4.5 |
SOAPdenovo | -27.67 × 107 | 1212959 | 99.12 | 660 | 131.7 |
Velvet | -28.77 × 107 | 1176125 | 98.40 | 353 | 15.7 |
Reference | -25.99 × 107 | 1255750 | - | - | - |