CGAL: computing genome assembly likelihoods

Table 2 Likelihoods of GAGE assemblies of S. aureus

Assembler	Likelihood	Number of reads mapped	Coverage (%)	Scaffold N50 (kb)	Contig N50 (kb)
ABySS	-23.34 × 10⁷	1236230	99.74^a	34	29.2
ALLPATHS-LG	-24.53 × 10⁷	1220328	99.38	1092	96.7
Bambus2	-23.76 × 10⁷	1200527	98.68	1084	50.2
MSR-CA	-25.85 × 10⁷	1192001	98.70	2412	59.2
SGA	-26.61 × 10⁷	1018936	98.09	208	4.0
SOAPdenovo	-23.55 × 10⁷	1212384	99.62	332	288.2
Velvet	-23.28 × 10⁷	1203907	99.21	762	48.4
Reference	-22.38 × 10⁷	1268718	-	-	-

ISSN: 1474-760X