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Table 6 Polymorphic CNVs in breeds with two samples

From: Novel origins of copy number variation in the dog genome

  

Loci matching

Shared loci between breeds

Private loci single breeds

Breed

Samples

reference

Total

Polymorphic

Fixed

Total

Polymorphic

Fixed

Border Terrier

2

274

154

55

99

2

0

2

Boxer

2

327

102

76

26

1

1

0

Cavalier King Charles Spaniel

2

241

182

77

105

7

4

3

Chihuahua

2

249

178

75

103

3

3

0

Dachshund

2

250

172

90

82

8

8

0

English Cocker Spaniel

2

264

165

73

92

1

1

0

English Springer Spaniel

2

216

207

102

105

7

6

1

Finnish Spitz

2

244

176

71

105

10

4

6

German Shepherd

2

267

160

73

87

3

1

2

Labrador Retriever

2

260

168

80

88

2

2

0

Nova Scotia Duck Tolling Retriever

2

237

190

89

101

3

2

1

Poodle

2

248

180

102

78

2

2

0

Sarloos

2

255

168

76

92

7

4

3

Schnauzer

2

261

163

79

84

6

5

1

Swedish Elkhound

2

271

158

85

73

1

0

1

Average

2

257.6

168.2

80.2

88

4.2

2.9

1.3

Wolf

3

267

160

121

39

3

3

0

  1. Total, number of CNVs observed in the breed; Polymorphic, average number of polymorphic CNV sites between samples of the breed; Fixed, number of CNVs found in both samples of the breed.
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Genome Biology

ISSN: 1474-760X

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