Novel origins of copy number variation in the dog genome

Table 4 Excess of L1 repeats in CNV breakpoints

Name	Excess^a	Divergence^b	Length (bp)	Number of repeats in genome	Number of repeats in breakpoints	Number of breakpoints with repeats
L1_Cf	3.92	0.035	1,192	16,127	178	137
L1_Canis	2.54	0.088	799	72,587	678	309
L1_Canid	1.87	0.144	534	42,070	254	135
L1_Carn	1.25	0.168	525	132,806	652	275
Eutheria	0.91	0.246	359	589,155	2046	590

^aThe proportion of repeat coverage in breakpoints versus whole genome. ^bAverage divergence of the repeat from its reference in RepBase.

ISSN: 1474-760X