From: Sequencing and characterization of the FVB/NJ mouse genome
Consequence | SNPs | Indels |
---|---|---|
5 kb upstream or downstream | 345,321 | 86,229 |
5' or 3' UTR | 19,402 | 3,769 |
Intronic | 864,790 | 173,237 |
Synonymous coding | 13,697 | NA |
Non-synonymous coding | 7,880 | NA |
Essential splice site | 10a (19) | 0a (3) |
Stop gain | 42a (71) | NA |
Stop lost | 6a (16) | NA |
In-frame codon insertion or deletion | NA | 140 |
Frameshift | NA | 126 |
Two or more consequences | 689,535 | 136,895 |
Within non-coding gene or mature microRNA | 115,453 | 22,735 |
5 kb upstream or downstream of non-coding gene | 163,280 | 31,988 |
Intergenic (>5 kb from a coding or non-coding gene) | 2,247,487 | 416,289 |