Skip to main content

Table 2 Comparison of speed and unique mapping rates on three lanes of human bisulfite data

From: BatMeth: improved mapper for bisulfite sequencing reads on DNA methylation

 

Number of reads

Unique mapping (%) a

Running time (minutes) a

Read file

 

BatMeth

BS-Seeker

BatMeth

BS-Seeker

SRR019048

15,331,851

37.4

37.2

30

87

SRR019501

7,217,883

44.7

44.5

16

41

SRR019597

5,943,586

58.2

58.1

13

37

  1. aThreshold of two mismatches used.