| SpliceGrapher | Supersplat | TopHat |
---|---|---|---|
A. thaliana | Â | Â | Â |
   Canonical junctions (GT-AG/GC-AG) within genes | 80,421 | 84,744 | 83,367 |
   Junctions in common | - | 74,821 | 63,710 |
   Novel junctions | 4,969 | 7,255 | 14,572 |
   Novel junctions with a false-positive site | - | 3,077 | 9,942 |
   Novel junctions in common | - | 3,599 | 1,982 |
V. vinifera | Â | Â | Â |
   Canonical junctions (GT-AG/GC-AG) within genes | 74,457 | 82,281 | 65,439 |
   Junctions in common | - | 70,554 | 59,154 |
   Novel junctions | 9,831 | 13,394 | 6,307 |
   Novel junctions with a false-positive site | - | 4,040 | 1,899 |
   Novel junctions in common | - | 8,020 | 3,662 |