| TAIR9 | TAIR10 | ||||||
---|---|---|---|---|---|---|---|---|
 | Recall | Novel | Transcripts | Recall | ||||
Method | Exons | Introns | Exons | Introns | Number | Percentage | Exons | Introns |
   Splicegrapher | 1.00 | 1.00 | 1,428 | 1,282 | 28 | 1.4% | 0.039 | 0.045 |
   Splicegrapher + EST | 1.00 | 1.00 | 11,299 | 3,557 | 38 | 1.9% | 0.050 | 0.056 |
   Cufflinks |  |  |  |  |  |  |  |  |
No gene models | 0.25 | 0.19 | 33,252 | 3,425 | 0 | 0.0% | 0.035 | 0.017 |
With gene models | 0.94 | 0.89 | 12,690 | 5,222 | 4 | 0.2% | 0.017 | 0.008 |
   TAU |  |  |  |  |  |  |  |  |
No gene models | 0.21 | 0.29 | 86,346 | 5,335 | 0 | 0.0% | 0.043 | 0.029 |
With gene models | 0.69 | 0.79 | 115,130 | 3,734 | 11 | 1.1% | 0.079 | 0.074 |