From: PARalyzer: definition of RNA binding sites from PAR-CLIP short-read sequence data
Cluster | miRbase ID | 8-mer | Expression rank | miRNA score | P-value | Number of targets | Cumulative number of targets |
---|---|---|---|---|---|---|---|
1 | hsa-mir-16-2 | TGCTGCTA | 22 | 17.93 | 3.0E-20 | 438 | 438 (3%) |
 | hsa-mir-15b | TGCTGCTA | 53 | 17.93 | 3.5E-20 | 438 | 438 (3%) |
 | hsa-mir-15a | TGCTGCTA | 64 | 17.93 | 3.5E-20 | 438 | 438 (3%) |
 | hsa-mir-195 | TGCTGCTA | NA | 17.93 | 3.5E-20 | 438 | 438 (3%) |
 | hsa-mir-16-1 | TGCTGCTA | NA | 17.93 | 3.5E-20 | 438 | 438 (3%) |
 | hsa-mir-103-2 | ATGCTGCT | 2 | 14.41 | 9.7E-13 | 620 | 620 (5%) |
 | hsa-mir-107 | ATGCTGCT | 39 | 14.41 | 9.7E-13 | 620 | 620 (5%) |
 | hsa-mir-103-1 | ATGCTGCT | NA | 14.41 | 9.7E-13 | 620 | 620 (5%) |
 | hsa-mir-424 | TGCTGCTG | 60 | 12.92 | 1.5E-08 | 632 | 632 (5%) |
 | hsa-mir-497 | TGCTGCTG | 133 | 12.92 | 1.5E-08 | 632 | 632 (5%) |
 | hsa-mir-646 | AGCTGCTT | NA | 10.5 | 1.1E-06 | 708 | 708 (6%) |
 | hsa-mir-503 | CGCTGCTA | 97 | 10.08 | 1.7E-07 | 714 | 714 (6%) |
2 | hsa-mir-106b | GCACTTTA | 5 | 17.63 | 8.9E-17 | 455 | 1,164 (9%) |
 | hsa-mir-20a | GCACTTTA | 9 | 17.63 | 8.9E-17 | 455 | 1,164 (9%) |
 | hsa-mir-106a | GCACTTTT | 121 | 15.65 | 1.6E-15 | 565 | 1,272 (10%) |
 | hsa-mir-519c | TGCACTTT | NA | 14.71 | 7.6E-21 | 689 | 1,395 (11%) |
 | hsa-mir-519c-3p | TGCACTTT | NA | 14.71 | 7.6E-21 | 689 | 1,395 (11%) |
 | hsa-mir-519a-2 | TGCACTTT | NA | 14.71 | 7.6E-21 | 689 | 1,395 (11%) |
 | hsa-mir-519b-3p | TGCACTTT | NA | 14.71 | 7.6E-21 | 689 | 1,395 (11%) |
 | hsa-mir-519a-1 | TGCACTTT | NA | 14.71 | 7.6E-21 | 689 | 1,395 (11%) |
 | hsa-mir-526bstar | GCACTTTC | NA | 14.57 | 4.8E-22 | 746 | 1,450 (12%) |
 | hsa-mir-93 | GCACTTTG | 1 | 12.99 | 1.4E-13 | 790 | 1,490 (12%) |
 | hsa-mir-17 | GCACTTTG | 10 | 12.99 | 1.4E-13 | 790 | 1,490 (12%) |
 | hsa-mir-20b | GCACTTTG | NA | 12.99 | 1.4E-13 | 790 | 1,490 (12%) |
 | hsa-mir-519d | GCACTTTG | NA | 12.99 | 1.4E-13 | 790 | 1,490 (12%) |
 | hsa-mir-520d-3p | AGCACTTT | NA | 12.15 | 4.2E-11 | 796 | 1,496 (12%) |
 | hsa-mir-520b | AGCACTTT | NA | 12.15 | 4.2E-11 | 796 | 1,496 (12%) |
 | hsa-mir-520e | AGCACTTT | NA | 12.15 | 4.2E-11 | 796 | 1,496 (12%) |
 | hsa-mir-372 | AGCACTTT | NA | 12.15 | 4.2E-11 | 796 | 1,496 (12%) |
 | hsa-mir-520c-3p | AGCACTTT | NA | 12.15 | 4.2E-11 | 796 | 1,496 (12%) |
 | hsa-mir-520a-3p | AGCACTTT | NA | 12.15 | 4.2E-11 | 796 | 1,496 (12%) |
 | hsa-mir-3609 | TCACTTTG | NA | 10.2 | 9.3E-09 | 798 | 1,498 (12%) |
3 | hsa-mir-92a-1 | GTGCAATA | 4 | 13.59 | 4.8E-10 | 223 | 1,709 (14%) |
 | hsa-mir-32 | GTGCAATA | 95 | 13.59 | 4.8E-10 | 223 | 1,709 (14%) |
 | hsa-mir-92b | GTGCAATA | 101 | 13.59 | 4.8E-10 | 223 | 1,709 (14%) |
 | hsa-mir-92a-2 | GTGCAATA | NA | 13.59 | 4.8E-10 | 223 | 1,709 (14%) |
 | hsa-mir-25 | GTGCAATG | 11 | 11.38 | 2.2E-09 | 239 | 1,722 (14%) |
 | hsa-mir-363 | GTGCAATT | 130 | 11.33 | 1.6E-09 | 265 | 1,746 (14%) |
 | hsa-mir-367 | GTGCAATT | NA | 11.33 | 1.6E-09 | 265 | 1,746 (14%) |
4 | hsa-mir-454 | TTGCACTA | 108 | 12.04 | 2.3E-04 | 298 | 1,904 (16%) |
5 | hsa-mir-101-2 | GTACTGTA | 12 | 11.87 | 1.7E-11 | 202 | 2,098 (17%) |
 | hsa-mir-101-1 | GTACTGTA | NA | 11.87 | 1.7E-11 | 202 | 2,098 (17%) |
 | hsa-mir-144 | ATACTGTA | NA | 9.83 | 8.3E-06 | 260 | 2,151 (18%) |