Table 3 Nineteen candidate fusions reported by TopHat-Fusion in the prostate cell line
From: TopHat-Fusion: an algorithm for discovery of novel fusion transcripts
Fusion genes (left-right) | Chromosomes (left-right) | 5' position | 3' position | Spanning reads | Spanning pairs |
|---|---|---|---|---|---|
ZDHHC7-ABCB9 | 16-12 | 85023908 | 123444867 | 13 | 69 |
TMPRSS2-ERG | 21-21 | 42879875 | 39817542 | 7 | 285 |
HJURP-EIF4E2 | 2-2 | 234749254 | 233421125 | 3 | 9 |
VWA2-PRKCH | 10-14 | 116008521 | 61909826 | 1 | 10 |
RGS3-PRKAR1B | 9-7 | 116299195 | 699055 | 3 | 11 |
SPOCK1-TBC1D9B | 5-5 | 136397966 | 179305324 | 9 | 31 |
LRP4-FBXL20 | 11-17 | 46911864 | 37557613 | 5 | 9 |
INPP4A-HJURP | 2-2 | 99193605 | 234746297 | 6 | 12 |
C16orf70-C16orf48 | 16-16 | 67144140 | 67700168 | 2 | 19 |
NDUFV2-ENSG00000188699 | 18-19 | 9102729 | 53727808 | 1 | 35 |
NEAT1-ENSG00000229344 | 11-1 | 65190281 | 568419 | 1 | 17 |
ENSG00000011405- TEAD1 | 11-11 | 17229396 | 12883794 | 7 | 9 |
USP10-ZDHHC7 | 16-16 | 84733713 | 85024243 | 1 | 22 |
LMAN2-AP3S1 | 5-5 | 176778452 | 115202366 | 15 | 2 |
WDR45L-ENSG00000224737 | 17-17 | 80579516 | 30439195 | 1 | 33 |
RC3H2-RGS3 | 9-9 | 125622198 | 116299072 | 3 | 11 |
CTNNA1-ENSG00000249026 | 5-5 | 138145895 | 114727795 | 1 | 12 |
IMMTP1-IMMT | 21-2 | 46097128 | 86389185 | 1 | 50 |
ENSG00000214009-PCNA | X-20 | 45918367 | 5098168 | 1 | 24 |