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Table 3 Nineteen candidate fusions reported by TopHat-Fusion in the prostate cell line

From: TopHat-Fusion: an algorithm for discovery of novel fusion transcripts

Fusion genes (left-right) Chromosomes (left-right) 5' position 3' position Spanning reads Spanning pairs
ZDHHC7-ABCB9 16-12 85023908 123444867 13 69
TMPRSS2-ERG 21-21 42879875 39817542 7 285
HJURP-EIF4E2 2-2 234749254 233421125 3 9
VWA2-PRKCH 10-14 116008521 61909826 1 10
RGS3-PRKAR1B 9-7 116299195 699055 3 11
SPOCK1-TBC1D9B 5-5 136397966 179305324 9 31
LRP4-FBXL20 11-17 46911864 37557613 5 9
INPP4A-HJURP 2-2 99193605 234746297 6 12
C16orf70-C16orf48 16-16 67144140 67700168 2 19
NDUFV2-ENSG00000188699 18-19 9102729 53727808 1 35
NEAT1-ENSG00000229344 11-1 65190281 568419 1 17
ENSG00000011405- TEAD1 11-11 17229396 12883794 7 9
USP10-ZDHHC7 16-16 84733713 85024243 1 22
LMAN2-AP3S1 5-5 176778452 115202366 15 2
WDR45L-ENSG00000224737 17-17 80579516 30439195 1 33
RC3H2-RGS3 9-9 125622198 116299072 3 11
CTNNA1-ENSG00000249026 5-5 138145895 114727795 1 12
IMMTP1-IMMT 21-2 46097128 86389185 1 50
ENSG00000214009-PCNA X-20 45918367 5098168 1 24
  1. Nineteen candidate fusions found by TopHat-Fusion in the VCaP prostate cell line, with previously reported fusions [11] indicated in boldface. Fusion genes are sorted according to the scoring scheme described in Materials and methods.