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Table 3 Genome and transcriptome assembly statistics

From: The draft genome and transcriptome of Cannabis sativa

 

Genome

Transcriptome

 

All a)

With transcript a)

All

Representative

Total bases (+ gaps)

786.6 Mb

532.3 Mb

40.63 Mb

33.20 Mb

Total bases (- gaps)

534.0 Mb

366.9 Mb

40.63 Mb

33.20 Mb

Scaffold N50

16.2 Kb

24.9 Kb

1.80 Kb

1.91 Kb

Number of scaffolds

136,290

45,776

40,224

30,074

Largest scaffold

565.9 Kb

565.9 Kb

12.11 Kb

12.11 Kb

  1. a) Only scaffolds and unplaced contigs larger than 400 bp are included in the genome assembly statistics.
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Genome Biology

ISSN: 1474-760X

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