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Table 3 Genome and transcriptome assembly statistics

From: The draft genome and transcriptome of Cannabis sativa

  Genome Transcriptome
  All a) With transcript a) All Representative
Total bases (+ gaps) 786.6 Mb 532.3 Mb 40.63 Mb 33.20 Mb
Total bases (- gaps) 534.0 Mb 366.9 Mb 40.63 Mb 33.20 Mb
Scaffold N50 16.2 Kb 24.9 Kb 1.80 Kb 1.91 Kb
Number of scaffolds 136,290 45,776 40,224 30,074
Largest scaffold 565.9 Kb 565.9 Kb 12.11 Kb 12.11 Kb
  1. a) Only scaffolds and unplaced contigs larger than 400 bp are included in the genome assembly statistics.