Table 2 Overview of transcriptome assembly stages

PK-Mid-flower

0.73

6.55

19.9

1.36

7.42

26.5

PK-Early-flower

0.64

4.94

16.7

1.06

6.11

24.0

PK-Pre-flower

0.80

6.74

21.4

1.56

7.89

28.0

PK-Shoot

0.69

6.16

20.2

1.34

7.41

26.8

PK-Stem

0.80

6.55

22.9

1.67

11.55

29.3

PK-Root

0.43

4.03

15.3

0.64

7.21

22.5

PK-tissue-all

0.62

8.74

26.7

-

-

-

PK-normalized1

-

-

-

1.78

10.96

31.1

PK-normalized2

-

-

-

1.72

7.89

34.2

PK-normalized3

-

-

-

1.84

8.19

34.7

PK-normalized4

-

-

-

1.71

7.10

32.1

PK-normalized-all

1.18

7.31

42.1

-

-

-

Library

Combined

N50 (kb)

Max (kb)

Total (Mb)

Non-redundant

1.65

11.55

49.4

Cap3 overlap merging

1.80

12.11

41.0