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Figure 4 | Genome Biology

Figure 4

From: Computational challenges in the analysis of ancient DNA

Figure 4

Divergence estimates by triangulation on simulated datasets. (a) 3DP divergence estimates in comparison to the expected values. Four bars are drawn for different filters: raw estimate without filtering on all unique alignments (brown); filtered alignments with verified human and chimpanzee genomic location using a whole genome alignment and a distance of at least 6 points between best and second best local alignments' bitscores (red); alignments of fragments with a size >35 bp (orange); and all filters applied (yellow). (b) Estimates are derived solely from transversion differences, otherwise identical to (a).

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